Index

B

bedgraph_to_dense() (in module rambutan.utils)

benjamini_hochberg() (in module rambutan.utils)

C

count_band_regions() (in module rambutan.utils)

D

downsample() (in module rambutan.utils)

E

encode_dnase() (in module rambutan.utils) extract_contacts() (in module rambutan.utils)

extract_dnase() (in module rambutan.rambutan) extract_regions() (in module rambutan.utils) extract_sequence() (in module rambutan.rambutan)

F

fasta_to_dense() (in module rambutan.utils)

fit() (rambutan.rambutan.Rambutan method)

I

insulation_score() (in module rambutan.utils)

P

predict() (rambutan.rambutan.Rambutan method) provide_data (rambutan.io.TrainingGenerator attribute) (rambutan.io.ValidationGenerator attribute)

provide_label (rambutan.io.TrainingGenerator attribute) (rambutan.io.ValidationGenerator attribute)

R

Rambutan (class in rambutan.rambutan) rambutan.io (module)

rambutan.rambutan (module) rambutan.utils (module)

T

TrainingGenerator (class in rambutan.io)

V

ValidationGenerator (class in rambutan.io)